Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs12312782 chr12:107135647 G/A 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs12321643 chr12:129302867 A/T 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs12321679 chr12:129284791 G/A 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs12333241 chr6:42671439 G/A 4.06E-6 129 40.08 51.67 23.82 KM Plot
TGCT rs12410079 chr1:65611399 T/C 0 128 45.7 28.8 0.57 KM Plot
TGCT rs12413577 chr10:27588303 C/T 0 127 42.27 43.2 18.85 KM Plot
TGCT rs12414089 chr10:27584269 C/T 0 127 42.18 45.83 18.85 KM Plot
TGCT rs12421762 chr11:67373669 G/T 0.000122 134 42.18 39.38 62.58 KM Plot
TGCT rs12444630 chr16:27814198 A/G 1.34E-5 130 42.1 44.05 17.27 KM Plot
TGCT rs12445660 chr16:27808615 A/G 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs12448720 chr16:27808626 T/C 1.15E-5 132 46.3 33.55 17.27 KM Plot
TGCT rs12463484 chr2:54757604 T/A 0.00012 134 45.7 44.05 18.57 KM Plot
TGCT rs12467653 chr2:54840760 C/T 7.58E-5 130 45.1 42.27 22.42 KM Plot
TGCT rs12473338 chr2:54838553 A/G 6.89E-5 131 45.1 44.05 22.42 KM Plot
TGCT rs12475598 chr2:54840326 A/G 7.53E-5 130 45.7 42.12 22.42 KM Plot